一种基于多特征的大肠杆菌启动子判别算法

主要对从一段DNA序列中提取出信息以判别其中是否含有启动子的问题进行了研究。首先从固定长度的序歹4中提取成分特征和结构特征,然后将这些特征输入到一个非线性分类器中进行判别。测试结果显示,在正集＆非编码区负集中,平均错误率降低为13．4％;在正集＆编码区负集中,平均错误率降低到17．0％。表明该方法是非常有效的。     

Reconsidering null models of diversity: Do geometric constraints on species ranges necessarily cause a mid‐domain effect?

Recent null models that place species ranges randomly within a bounded domain have produced controversial results. Many such geometric constraint models predict a peak in species richness in the centre of domains in the absence of underlying environmental gradients or interspecific interactions. We used two-dimensional simulation models to explore different ways that species ranges could interact with the domain boundary. In the rejection model, a randomly generated range that overlaps a domain boundary is removed from the simulation. In the reshaping model, a range that overlaps the domain boundary is reshaped so that the entire range is placed within the domain. The truncation model allows potential ranges to extend across the boundary, but only that portion of the range within the domain is included in the realized range. Both rejection and reshaping models produced a drop in species richness near domain boundaries, though the effect was less pronounced in the reshaping model. Our truncation model did not produce any spatial pattern in species richness. Thus the random placement of species ranges within a bounded domain does not necessarily lead to a mid-domain effect.
  Range truncation is consistent with bioclimate envelope models, which can successfully predict a species range in response to the availability of appropriate climate conditions. We argue that such flexible range sizes are more realistic than the assumption that range size is an unvarying characteristic of a species. Other range characteristics, including size and shape, can change near domain boundaries in the null models, including the truncation model. A broader consideration of range characteristics near domain boundaries could be productive.     

No heat-stimulated germination found in herbaceous species from burned subtropical grassland

The inverse relationship between numbers of stomata (stomatal frequency) on tree leaves and ambient CO₂ concentration is increasingly applied for reconstructing past atmospheric CO₂ levels. The abundance of leaf remains of Quercus robur in Holocene peat and lake deposits in Europe makes this species potentially suitable for high-resolution stomatal frequency analysis. In order to quantify the CO₂ responsiveness of the species, the behavior of the stomatal index for Q. robur during the current anthropogenic CO₂ increase is determined on the basis of buried, herbarium and modern leaf material from the Netherlands. The stomatal index (SI), expressing the ratio of the number of stomata in a given area divided by the total number of stomata and other epidermal cells in that same area, is used in order to minimize influences on stomatal frequency of environmental conditions other than CO₂. The sigmoid SI response pattern recorded for Q. robur resembles that of the closely related species Q. petraea, although there is a difference in the timing of the response limitation of the two species to increasing atmospheric CO₂. For calibration purposes only the linear phase of the sigmoidal response curve is taken into consideration in the presented CO₂ response model, which allows confident combination of Q. robur and Q. petraea over the interval from 290 to 325 ppmv CO₂. The model is conservative in reconstructing past CO₂ mixing ratios outside the range of monitored response. As a result of the observed SI response limit, the model predicts CO₂ levels below 325 ppmv with a mean error of 10.2 ppmv, whereas higher CO₂ levels are underestimated.     

Evidences of introgression from cultivated rice to Oryza rufipogon (Poaceae) populations based on SSR fingerprinting: implications for wild rice differentiation and conservation

Crop-to-wild introgression may play an important role in evolution of wild species. Asian cultivated rice (Oryza sativa L.) is of a particular concern because of its cross-compatibility with the wild ancestor, O. rufipogon Griff. The distribution of cultivated rice and O. rufipogon populations is extensively sympatric, particularly in Asia where many wild populations are surrounded by rice fields. Consequently, gene flow from cultivated rice may have a potential to alter genetic composition of wild rice populations in close proximity. In this study, we estimated introgression of cultivated rice with O. rufipogon based on analyses of 139 rice varieties (86 indica and 53 japonica ecotypes) and 336 wild individuals from 11 O. rufipogon populations in China. DNA fingerprinting based on 17 selected rice simple sequence repeat (SSR) primer pairs was adopted to measure allelic frequencies in rice varieties and O. rufipogon samples, and to estimate genetic associations between wild and cultivated rice through cluster analysis. We detected consanguinity of cultivated rice in O. rufipogon populations according to the admixture model of the STRUCTURE program. The analyses showedz that four wild rice populations, DX-P1, DX-P2, GZ-P2, and HL-P, contained some rare alleles that were commonly found in the rice varieties examined. In addition, the four wild rice populations that scattered among the rice varieties in the cluster analysis showed a closer affinity to the cultivars than the other wild populations. This finding supports the contention of substantial gene flow from crop to wild species when these species occur close to each other. The introgressive populations had slightly higher genetic diversity than those that were isolated from rice. Crop-to-wild introgression may have accumulative impacts on genetic variations in wild populations, leading to significant differentiation in wild species. Therefore, effective measure should be taken to avoid considerable introgression from cultivated rice, which may influence the effective in-situ conservation of wild rice species.     

Mating Frequency, Fecundity and Fertilization Success in the Hide Beetle, Dermestes Maculatus

While the immediate benefits accrued to females through multiple mating are well documented, the effect of sperm depletion for multiply mating males is rarely considered. We show that, in small mixed-sex laboratory aggregations, both male and female hide beetles, Dermestes maculatus (De Geer) mated multiply. There was considerable variation in the mating frequency of both sexes; however the skew in mating success was comparable for males and females. Several individuals that mated multiply also re-mated with a previous partner, but in a competitive environment no male copulated more than seven times. Mating success was unrelated to an individual's size, but males that had the most inter-sexual matings also engaged in the most intra-sexual mating attempts. In a second experiment, we show that, even in the absence of rivals, only a small number of males mated with all available virgin females. Moreover, even though males were mated twice to each female, males that copulated more than eight times failed to fertilize any eggs. We suggest that under natural conditions male hide beetles may refrain from mating either prior to, or at the point of, sperm depletion thereby reducing the selection pressure for females to discriminate against sperm depleted males. However, fecundity and fertilization success varied considerably across females and even those mating with sperm-replete males were unable to fertilize 100% of their egg batch. Thus, direct fertilization benefits accrued by females through mating more than once with the same male may play a key role in the maintenance of polyandry in this species.     

Fire Frequency and Mosaic Burning Effects on a Tallgrass Prairie Ground Beetle Assemblage

Fire frequency has significant effects on the biota of tallgrass prairie, including mammals, vascular plants and birds. Recent concern has been expressed that widespread annual burning, sometimes in combination with heavy livestock grazing, negatively impacts the biota of remaining prairie remnants. A common management recommendation, intended to address this problem, is to create a landscape with a mosaic of different burn regimes. Pitfall trapping was used to investigate the impacts of fire pattern on the diversity and species composition of ground beetles (Coleoptera: Carabidae) at Konza Prairie Biological Station in eastern Kansas, USA. Trapping was conducted over three seasons in landscape units burned on average every 1, 4, or 20 years, and in a fourth season across the available range of vegetative structure to assess the variability of the community within the study system. In the fifth season communities were also followed immediately after two fire events to detect within-season effects of fire and to study short-term patterns of post-disturbance community assembly. Fire frequency had comparatively minimal effects on ground beetle diversity measures, and most numerically common species were observed widely across habitat and management types. Fire frequency effects were manifested primarily in changes in abundance of common species. Colonization of burned areas apparently did not occur from juxtaposed non-burned areas, but from underground or from long distances. While these results suggest that widespread annual burning of tallgrass prairie remnants may not have dramatic effects on prairie ground beetles, we urge caution regarding the application of these results to other taxa within tallgrass prairie.     

经验改变大鼠听皮层神经元的特征频率

应用常规电生理学技术,以神经元的特征频率和频率调谐曲线为指标,研究大鼠听皮层神经元特征频率的可塑性. 结果表明,在给予的条件刺激频率和神经元特征频率相差1.0 kHz范围内,条件刺激可诱导50%以上神经元特征频率发生完全偏移,并可分为向频率调谐曲线的低频端偏移、高频端偏移,或两侧均可偏移三种类型. 其中,神经元的特征频率高、Q₁₀-dB值大和频率调谐曲线对称指数大于零的神经元,其特征频率偏向频率调谐曲线高频端的概率更高. 结果提示,经验可改变大鼠听皮层神经元的特征频率,为深入研究中枢神经元功能活动可塑性的机制提供了重要实验资料.     

重复经颅磁刺激对脑卒中后患者神经功能缺损的改善

目的:探讨重复经颅磁刺激在脑卒中康复的应用及效果.方法:选择2010年9月至2012年9月在我院神经内科收治的58例脑卒中患者分为两组,即A组和B组,A组患者给予常规药物治疗和康复训练,B组患者在上述治疗的基础上加用低频重复经颅磁刺激治疗,比较两组患者美国国立卫生院神经功能缺损评分情况、日常生活活动(ADL)评分和不良反应发生情况.结果:治疗后,随着时间的推移,两组患者美国国立卫生院神经功能缺损评分得分逐渐下降(P＜0.05).B组患者2周后和6周后两个时点美国国立卫生院神经功能缺损评分得分明显低于A组患者的,差异有显著性(P＜0.05),而随着时间的推移,两组患者日常生活活动(ADL)评分得分逐渐上升(P＜0.05).B组患者2周后和6周后两个时点日常生活活动(ADL)评分得分明显高于A组患者的,差异有显著性(P＜0.05).两组患者在不良反应发生方面差异无显著性(P＞0.05).结论:低频重复经颅磁刺激治疗脑卒中单侧肢体功能障碍患者临床疗效确切,安全可靠,不良反应少.     

Multilocus patterns of genetic variation across Cryptosporidium species suggest balancing selection at the gp60 locus

Cryptosporidium is an apicomplexan protozoan that lives in most vertebrates, including humans. Its gp60 gene is functionally involved in its attachment to host cells, and its high level of genetic variation has made it the reference marker for sample typing in epidemiological studies. To understand the origin of such high diversity and to determine the extent to which this classification applies to the rest of the genome, we analysed the patterns of variation at gp60 and nine other nuclear loci in isolates of three Cryptosporidium species. Most loci showed low genetic polymorphism (π_S <1%) and similar levels of between‐species divergence. Contrastingly, gp60 exhibited very different characteristics: (i) it was nearly ten times more variable than the other loci; (ii) it displayed a significant excess of polymorphisms relative to between‐species differences in a maximum‐likelihood Hudson–Kreitman–Aguadé test; (iii) gp60 subtypes turned out to be much older than the species they were found in; and (iv) showed a significant excess of polymorphic variants shared across species from random expectations. These observations suggest that this locus evolves under balancing selection and specifically under negative frequency‐dependent selection (FDS). Interestingly, genetic variation at the other loci clusters very well within the groups of isolates defined by gp60 subtypes, which may provide new tools to understand the genome‐wide patterns of genetic variation of the parasite in the wild. These results suggest that gp60 plays an active and essential role in the life cycle of the parasite and that genetic variation at this locus might be essential for the parasite's long‐term success.